Dose dependence of radiation damage for protein crystals studied at various X-ray energies.

نویسندگان

  • Nobutaka Shimizu
  • Kunio Hirata
  • Kazuya Hasegawa
  • Go Ueno
  • Masaki Yamamoto
چکیده

Radiation damage to protein crystals is the most serious problem in obtaining accurate structures from protein crystallography. In order to examine the photon energy dependence of radiation damage, 12 to 15 data sets from each of nine tetragonal lysozyme crystals were collected at nine different X-ray energies (6.5, 7.1, 8.3, 9.9, 12.4, 16.5, 20.0, 24.8 and 33.0 keV) using beamline BL41XU at SPring-8. All results were compared on the basis of absorbed dose, expressed in Gray (Gy). Crystallographic statistics, such as the values of lattice constants, R(merge) and I/sigma(I), for each data set degraded at all nine energies as the exposure time for each crystal increased. In all data sets, radiation damage was observed after the absorbed dose exceeded 10(6) Gy. However, from the point of view of crystallographic statistics normalized to the absorbed dose, no clear dependence on photon energy was observed in these results. Structural refinement showed that the average B-factor for the last data set was larger than that for the first data set at all energies tested. However, no energy dependence of radiation damage on B-factor was found. Furthermore, disruption of disulfide bonds due to radiation damage was observed in electron density maps even at the highest photon energy (33 keV) used in this study. Therefore, these results suggest that radiation damage in the energy range investigated could be evaluated based on absorbed dose without energy dependence, and that it is important to minimize the absorbed dose in a crystal sample for obtaining an accurate protein structure.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

An in-vivo study on the energy dependence of X-ray biological effectiveness

Background: The International Commission on Radiological Protection (ICRP) has attributed the same relative risk for X and gamma radiations of all energies. Several studies have proven that the biological effect of low energy photon is more than that of higher ones. The assessment of risks is important due to the wide use of low energy X-rays for mammography screening and other diagnostic appli...

متن کامل

Monte Carlo radiography simulation for assessment of absorbed radiation dose in femur bone marrow during X-ray radiography for constant mAs and AEC techniques

Background: The purpose of this study was to find the accurate absorbed dose in the femur bone marrow during the X-ray radiography for constant mAs and AEC techniques. Materials and Methods: The DOSXYZnrc was used to simulate radiation doses in two human femurs during diagnostic radiography. EGSnrc phantoms produced from actual CT images of human femurs were modified by adding seven micrometre ...

متن کامل

Primary radiation damage of protein crystals by an intense synchrotron X-ray beam.

X-ray radiation damage of a lysozyme single crystal by an intense monochromatic beam from a third-generation radiation source at the Advanced Photon Source has been studied. The results show that primary radiation damage is linearly dependent on the X-ray dose even when the crystal is at cryogenic temperatures. The existence of an upper limit for the primary radiation damage was observed. Above...

متن کامل

بررسی تابش کانالی از ‌بلور‌های الماس به منظور تهیه پرتو X تک انرژی درشتاب دهنده خطی الکترون ELBE

The measurements of electron Channeling Radiation (CR) have been performed at ELBE linear electron accelerator of the Forschungszentrum Dresden-Rossendorf. The aim of performing these experiments was to optimize radiation yield and spectral line width of CR in order to apply channeling radiation for preparing a monochromatic X-ray source. Diamond crystals can be used in relatively high electron...

متن کامل

Radiation damage in protein crystals is reduced with a micron-sized X-ray beam.

Radiation damage is a major limitation in crystallography of biological macromolecules, even for cryocooled samples, and is particularly acute in microdiffraction. For the X-ray energies most commonly used for protein crystallography at synchrotron sources, photoelectrons are the predominant source of radiation damage. If the beam size is small relative to the photoelectron path length, then th...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Journal of synchrotron radiation

دوره 14 Pt 1  شماره 

صفحات  -

تاریخ انتشار 2007